Identification, structural characterization, and in silico expression analysis of the sucrose transporter ‘SWEET’ gene family in peanut (Arachis hypogaea)

Authors

  • Ha Duc Chu* Agricultural Genetics Institute, Vietnam Academy of Agricultural Sciences
  • Quynh Thi Ngoc Le Faculty of Chemistry and Environment, Thuyloi University
  • Yen Hai Thi Hoang Faculty of Biology, Agricultural Technology, Hanoi Pedagogical University 2
  • Thu Phuong Pham Faculty of Biology, Agricultural Technology, Hanoi Pedagogical University 2
  • Hong Viet La Faculty of Biology, Agricultural Technology, Hanoi Pedagogical University 2
  • Nguyet Minh Thi Nguyen Agricultural Genetics Institute, Vietnam Academy of Agricultural Sciences
  • Anh Xuan Duong Padworth College, United Kingdom
  • Thao Duc Le Agricultural Genetics Institute, Vietnam Academy of Agricultural Sciences
  • Linh Hung Le Agricultural Genetics Institute, Vietnam Academy of Agricultural Sciences
  • Hoi Xuan Pham Agricultural Genetics Institute, Vietnam Academy of Agricultural Sciences

Abstract

SWEET (Sugars Will Eventually be Exported Transporter) proteins are well known to play pivotal roles in the growth and development of plants. Here, we report the presence of 43 members of the AhSWEET family in peanut (Arachis hypogaea) and determine their general characteristics including chromosomal localization, gene structure, and numerous physical and chemical features of the proteins. We found that the AhSWEET genes were unevenly distributed among the peanut’s 20 chromosomes. The AhSWEET proteins were hydrophobic with a grand average hydropathicity >0 while a majority of the proteins were basic with isoelectric points >7.0. Additionally, most of the AhSWEET genes contained 6 exons and 5 introns. The expression profiles of the AhSWEET genes were explored based on the previous transcriptome atlas. Interestingly, we found that the AhSWEET genes exhibited differential expression patterns across various organs and tissues during the growth and development of peanut plants. Our study provides a solid foundation of the AhSWEET gene family for further functional characterization of AhSWEET genes in the regulation of peanut growth and development.

Keywords:

bioinformatics, expression profiles, genomewide, peanut, sucrose transporter, SWEET

DOI:

https://doi.org/10.31276/VJSTE.62(3).62-67

Classification number

3.1

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Published

2020-09-15

Received 2 March 2020; accepted 29 May 2020

How to Cite

Ha Duc Chu, Quynh Thi Ngoc Le, Yen Hai Thi Hoang, Thu Phuong Pham, Hong Viet La, Nguyet Minh Thi Nguyen, Anh Xuan Duong, Thao Duc Le, Linh Hung Le, & Hoi Xuan Pham. (2020). Identification, structural characterization, and in silico expression analysis of the sucrose transporter ‘SWEET’ gene family in peanut (Arachis hypogaea). Vietnam Journal of Science, Technology and Engineering, 62(3), 62-67. https://doi.org/10.31276/VJSTE.62(3).62-67

Issue

Section

Life Sciences